Over 300 Publications and Counting

Researchers from around the globe publish multiple papers per month in peer-reviewed journals using products from Arbor Biosciences.

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J-S. Kim et al. (2015). Transcriptional profiling of thymidine-producing strain recombineered from Escherichia coli BL21. American Journal of Botany

J-S. Kim et al. (2015). Deoxycytidine production by a metabolically engineered Escherichia coli strain. Microbial Cell Factories

M.K. Yadav et al. (2015). The Small Molecule DAM Inhibitor, Pyrimidinedione, Disrupts Streptococcus pneumoniae Biofilm Growth In Vitro. PLoS One

B. Shin & W. Park. (2015). Synergistic Effect of Oleanolic Acid on Aminoglycoside Antibiotics againstAcinetobacter baumannii. PLoS One

U. Gautam et al. (2015). In-Vivo Gene Signatures ofMycobacterium tuberculosis in C3HeB/FeJ Mice. PLoS One

S. Kim et al. (2015). Pseudomonas aeruginosaDesB Promotes Staphylococcus aureus Growth Inhibition in Coculture by Controlling the Synthesis of HAQs. PLoS One

J.M.J. Favela-Hernandez et al. (2015). Potential Mechanism of Action of 3′-Demethoxy-6-O-demethyl-isoguaiacin on Methicillin Resistant Staphylococcus aureus. Molecules

J. Kovac et al. (2015). Antibiotic Resistance Modulation and Modes of Action of (-)-α-Pinene inCampylobacter jejuni. PLoS One

A. Rahmani-Badi et al. (2015). Dissection of the cis-2-decenoic acid signaling network inPseudomonas aeruginosa using microarray technique. Frontiers in Microbiology

O.H. Donohoe et al. (2015). Identification and Characterization of Cyprinid Herpesvirus-3 (CyHV-3) Encoded MicroRNAs. PLoS One

R. Zoschke & A. Barkan. (2015). Genome-wide analysis of thylakoid-bound ribosomes in maize reveals principles of cotranslational targeting to the thylakoid membrane. PNAS

A. McGillivray et al. (2015). TheMycobacterium tuberculosis Clp Gene Regulator Is Required for in Vitro Reactivation from Hypoxia-induced Dormancy. Journal of Biological Chemistry

A. Clemente-Soto, et al. (2014). Potential Mechanism of Action of meso-Dihydroguaiaretic Acid onMycobacterium tuberculosis H37Rv. Molecules

H. Trigui, et al. (2014). A regulatory feedback loop between RpoS and SpoT supports the survival of Legionella pneumophila in water. Applied and Environmental Microbiology

S. Park, et al. (2014). Metabolic engineering of Corynebacterium glutamicum for L-arginine production. Nature Communications

M. Kim, et al. (2014). Development of a phylogenetic microarray for comprehensive analysis of ruminal bacterial communities. Journal of Applied Microbiology

M. Laranjo, et al. (2014). Genes commonly involved in acid tolerance are not overexpressed in the plant microsymbiont Mesorhizobium loti MAFF303099 upon acidic shock. Applied Microbiology and Biotechnology

D. Fox, et al. (2014). Sub-Inhibitory Fosmidomycin Exposures Elicits Oxidative Stress in Salmonella enterica Serovar typhimurium LT2. PLOS One

Z. Wu, et al. (2014). Genetic Diversity and Antimicrobial Susceptibility of Campylobacter jejuni Isolates Associated with Sheep Abortion in the United States and Great Britain. Journal of Clinical Microbiology

K Hammani and A. Barkan. (2014). An mTERF domain protein functions in group II intron splicing in maize chloroplasts. NAR

Alexander, A. M. et al. (2017). Genomic data reveals potential for hybridization, introgression, and incomplete lineage sorting to confound phylogenetic relationships in an adaptive radiation of narrow-mouth frogs. Evolution.

Arcila, D. et al. (2017). Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life. Nature Ecology & Evolution.

Baca, S. M. et al. (2017). Ultraconserved elements show utility in phylogenetic inference of Adephaga (Coleoptera) and suggest paraphyly of ‘Hydradephaga’: Phylogeny of Adephaga inferred with UCEs. Systematic Entomology.

Borowiec, M. L. (2017). Convergent evolution of the army ant syndrome and congruence in big-data phylogenetics. BioRxiv.

Branstetter, M. G. et al. (2017). Enriching the ant tree of life: enhanced UCE bait set for genome-scale phylogenetics of ants and other Hymenoptera. Methods in Ecology and Evolution.

Bryson, R. W. et al. (2017). A phylogenomic perspective on the biogeography of skinks in the Plestiodon brevirostris group inferred from target enrichment of ultraconserved elements. Journal of Biogeography.
Burrel, S. et al. (2017). Ancient Recombination Events between Human Herpes Simplex Viruses. Molecular Biology and Evolution.

Burridge, A. J. et al. (2017). Conversion of array-based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum). Plant Biotechnology Journal.

Chakrabarty, P. et al. (2017). Phylogenomic Systematics of Ostariophysan Fishes: Ultraconserved Elements Support the Surprising Non-Monophyly of Characiformes. Systematic Biology.

Christmas, M. J. et al. (2017). Targeted capture to assess neutral genomic variation in the narrow-leaf hopbush across a continental biodiversity refugium. Scientific Reports.

Chyleński, M. et al. (2017). Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC. BMC Evolutionary Biology.

Crowl, A. A. et al. (2017). Embracing discordance: Phylogenomic analyses provide evidence for allopolyploidy leading to cryptic diversity in a Mediterranean Campanula (Campanulaceae) clade. Evolution.
Cruz-Dávalos, D. I. et al. (2017). Experimental conditions improving in-solution target enrichment for ancient DNA. Molecular Ecology Resources.

Devault, A. M. et al. (2017). A molecular portrait of maternal sepsis from Byzantine Troy. ELife.

Elbers, J. P. et al. (2017). Population genetic inferences using immune gene SNPs mirror patterns inferred by microsatellites. Molecular Ecology Resources.

Eriksson, J. S. et al. (2017). A cryptic species produced by autopolyploidy and subsequent introgression involving Medicago prostrata (Fabaceae). Molecular Phylogenetics and Evolution.

Esselstyn, J. A. et al. (2017). Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements. Genome Biology and Evolution.

Figueiro, G. et al. (2017). Análisis Del Genoma Mitocondrial De Dos Individuos Inhumados En El Sitio Arqueológico Cg14e01 “ISLA Larga” (ROCHA, Uruguay). Revista Argentina de Antropología Biológica.

Foerster, D. et al. (2017). Targeted re-sequencing of coding DNA sequences for SNP discovery in non-model species. BioRxiv.

Folk, R. A. et al. (2017). Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms. Systematic Biology.

Froese, D. et al. (2017). Fossil and genomic evidence constrains the timing of bison arrival in North America. Proceedings of the National Academy of Sciences.

Gallagher, J. P. et al. (2017). A New Species of Cotton from Wake Atoll, Gossypium stephensii (Malvaceae). Systematic Botany.

García, N. et al. (2017). Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae). Molecular Phylogenetics and Evolution.
Gaudry, M. J. et al. (2017). Evolution of UCP1 Transcriptional Regulatory Elements Across the Mammalian Phylogeny. Frontiers in Physiology.

Gaudry, M. J. et al. (2017). Inactivation of thermogenic UCP1 as a historical contingency in multiple placental mammal clades. Science Advances.

Giolai, M. et al. (2017). Comparative analysis of targeted long read sequencing approaches for characterization of a plant’s immune receptor repertoire. BMC Genomics.

Grealy, A. et al. (2017). Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell. Molecular Phylogenetics and Evolution.

Grover, C. E. et al. (2017). Nucleotide diversity in the two co-resident genomes of allopolyploid cotton. Plant Systematics and Evolution.

Gutiérrez, E. E. et al. (2017). A gene-tree test of the traditional taxonomy of American deer: the importance of voucher specimens, geographic data, and dense sampling. ZooKeys.

Heintzman, P. D. et al. (2017). A new genus of horse from Pleistocene North America. BioRxiv.

Hulsey, C. D. et al. (2017). Phylogenomic analysis of Lake Malawi cichlid fishes: Further evidence that the three-stage model of diversification does not fit. Molecular Phylogenetics and Evolution.

Ješovnik, A. et al. (2017). Phylogenomic species delimitation and host-symbiont coevolution in the fungus-farming ant genus SericomyrmexMayr (Hymenoptera: Formicidae): ultraconserved elements (UCEs) resolve a recent radiation. Systematic Entomology.

Jiang, J. et al. (2017). Gene markers for exon capture and phylogenomics in ray-finned fishes. BioRxiv.

Juras, A. et al. (2017). Diverse origin of mitochondrial lineages in Iron Age Black Sea Scythians. Scientific Reports.

Juras, A. et al. (2017). Investigating kinship of Neolithic post-LBK human remains from Krusza Zamkowa, Poland using ancient DNA. Forensic Science International: Genetics.

Kamneva, O. K. et al. (2017). Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing. BMC Evolutionary Biology.

Karpinski, E. et al. (2017). Molecular identification of paleofeces from Bechan Cave, southeastern Utah, USA. Quaternary International.

Kennett, D. J. et al. (2017). Archaeogenomic evidence reveals prehistoric matrilineal dynasty. Nature Communications.

Kingsley, E. P. et al. (2017). The ultimate and proximate mechanisms driving the evolution of long tails in forest deer mice. Evolution.

Kirillova, I. V. et al. (2017). Discovery of the skull of Stephanorhinus kirchbergensi (Jäger, 1839) above the Arctic Circle. Quaternary Research.

Kistler, L. et al. (2017). A massively parallel strategy for STR marker development, capture, and genotyping. Nucleic Acids Research.

Landis, J. B. et al. (2017). Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae). BMC Genomics.

Lindo, J. et al. (2017). Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity. Proceedings of the National Academy of Sciences.
Liu, J. et al. (2017). Multilocus DNA barcoding – Species Identification with Multilocus Data. BioRxiv.

Longo, S. J. et al. (2017). Phylogenomic analysis of a rapid radiation of misfit fishes (Syngnathiformes) using ultraconserved elements. Molecular Phylogenetics and Evolution.

Marshall, C. et al. (2017). Performance evaluation of a mitogenome capture and illumina sequencing protocol using non-probative, case-type skeletal samples: Implications for the use of a positive control in a next-generation sequencing procedure. Forensic Science International: Genetics.

Maschenko, E. N. et al. (2017). The Zhenya Mammoth (Mammuthus primigenius (Blum.)): Taphonomy, geology, age, morphology and ancient DNA of a 48,000 year old frozen mummy from western Taimyr, Russia. Quaternary International.

Mohandesan, E. et al. (2017). Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel. Molecular Ecology Resources.

Molto, J. E. et al. (2017). Complete Mitochondrial Genome Sequencing of a Burial from a Romano–Christian Cemetery in the Dakhleh Oasis, Egypt: Preliminary Indications. Genes.

Moore, A. et al. (2017). Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo (Caryophyllales). BioRxiv.

Morales, A. E. et al. (2017). Speciation with Gene Flow in North American Myotis Bats. Systematic Biology.

Nielsen, E. E. et al. (2017). Extracting DNA from ‘jaws’: high yield and quality from archived tiger shark (Galeocerdo cuvier) skeletal material. Molecular Ecology Resources.

Onar, V. et al. (2017). Did the historical range of the European bison (Bison bonasus L.) extend further south?—a new finding from the Yenikapı Metro and Marmaray excavation, Turkey. Mammal Research.

Perry, T. et al. (2017). Ancient DNA analysis of the extinct North American flat-headed peccary ( Platygonus compressus ). Molecular Phylogenetics and Evolution.

Pfeifer, S. P. et al. (2017). The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow. BioRxiv.

Phuong, M. A. et al. (2017). Targeted sequencing of venom genes from cone snail genomes reveals coupling between dietary breadth and conotoxin diversity. BioRxiv.

Pie, M. R. et al. (2017). Phylogenomic Species Delimitation In Microendemic Frogs Of The Brazilian Atlantic Forest. BioRxiv.

Platt, R. N. et al. (2017). Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats. Systematic Biology.

Quattrini, A. et al. (2017). Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems. BioRxiv.

Ruane, S. et al. (2017). Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens. Molecular Ecology Resources.

Sánchez Barreiro, F. et al. (2017). Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes. Molecular Ecology Resources.

Savage, A. E. et al. (2017). Lost but not forgotten: MHC genotypes predict overwinter survival despite depauperate MHC diversity in a declining frog. Conservation Genetics.

Shaffer, H. B. et al. (2017). Phylogenomic analyses of 539 highly informative loci dates a fully resolved time tree for the major clades of living turtles (Testudines). Molecular Phylogenetics and Evolution.

Singhal, S. et al. (2017). Squamate Conserved Loci (SqCL): A unified set of conserved loci for phylogenomics and population genetics of squamate reptiles. Molecular Ecology Resources.

Song, S. et al. (2017). Species delimitation and phylogenetic reconstruction of the sinipercids (Perciformes: Sinipercidae) based on target enrichment of thousands of nuclear coding sequences. Molecular Phylogenetics and Evolution.

Souza, C. A. et al. (2017). Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus). Scientific Reports.

Starrett, J. et al. (2017). High phylogenetic utility of an ultraconserved element probe set designed for Arachnida. Molecular Ecology Resources.

Ströher, P. R. et al. (2017). The mitochondrial genome of Octostruma stenognatha and its phylogenetic implications. Insectes Sociaux.

Tennessen, J. A. et al. (2017). A Targeted Capture Linkage Map Anchors the Genome of the Schistosomiasis Vector Snail, Biomphalaria glabrata. G3: Genes, Genomes, Genetics.

Thomas, J. E. et al. (2017). An ‛Aukward’ Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks. Genes.

Trimpert, J. et al. (2017). A phylogenomic analysis of Marek’s disease virus (MDV) reveals independent paths to virulence in Eurasia and North America. Evolutionary Applications.

Vezzulli, L. et al. (2017). Whole-Genome Enrichment Provides Deep Insights into Vibrio cholerae Metagenome from an African River. Microbial Ecology.

vonHoldt, B. M. et al. (2017). Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs. Science Advances.

Wang, N. et al. (2017). Historical relationships of three enigmatic phasianid genera (Aves: Galliformes) inferred using phylogenomic and mitogenomic data. Molecular Phylogenetics and Evolution.

Wei, N. et al. (2017). Genetic mapping and phylogenetic analysis reveal intraspecific variation in sex chromosomes of the Virginian strawberry. Journal of Heredity.

Wei, N. et al. (2017). Present-day sympatry belies the evolutionary origin of a high-order polyploid. New Phytologist.

White, W. T. et al. (2017). Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family. Zoological Journal of the Linnean Society.

Zarza, E. et al. (2017). Bridging multilocus species delimitation and DNA barcoding through target enrichment of UCEs: A case study with Mexican highland frogs. BioRxiv.

Ali, O. A. et al. (2016). RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping. Genetics.

Bailey, S. E. et al. (2016). The use of museum samples for large-scale sequence capture: a study of congeneric horseshoe bats (family Rhinolophidae). Biological Journal of the Linnean Society.

Blaimer, B. B. et al. (2016). Phylogenomics, biogeography and diversification of obligate mealybug-tending ants in the genus Acropyga. Molecular Phylogenetics and Evolution.

Blaimer, B. B. et al. (2016). Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens. PLOS ONE.

Branstetter, M. G. et al. (2016). Into the tropics: phylogenomics and evolutionary dynamics of a contrarian clade of ants. BioRxiv.

Branstetter, M. G. et al. (2016). Phylogenomic Analysis of Ants, Bees and Stinging Wasps: Improved Taxon Sampling Enhances Understanding of Hymenopteran Evolution. BioRxiv.

Bryson, R. W. et al. (2016). Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae). The Auk.

Campana, M. G. et al. (2016). Simultaneous identification of host, ectoparasite and pathogen DNA via in-solution capture. Molecular Ecology Resources.

Christmas, M. J. et al. (2016). Finding needles in a genomic haystack: targeted capture identifies clear signatures of selection in a nonmodel plant species. Molecular Ecology.

Delsuc, F. et al. (2016). The phylogenetic affinities of the extinct glyptodonts. Current Biology.

Dowle, E. J. et al. (2016). Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates. Molecular Ecology Resources.

Duggan, A. T. et al. (2016). 17th Century Variola Virus Reveals the Recent History of Smallpox. Current Biology.

Duvall, M. R. et al. (2016). Phylogenomics and Plastome Evolution of the Chloridoid Grasses (Chloridoideae: Poaceae). International Journal of Plant Sciences.

Enk, J. et al. (2016). Mammuthus Population Dynamics in Late Pleistocene North America: Divergence, Phylogeography, and Introgression. Frontiers in Ecology and Evolution.

Fijarczyk, A. et al. (2016). Selective Landscapes in newt Immune Genes Inferred from Patterns of Nucleotide Variation. Genome Biology and Evolution.

Fisher, A. E. et al. (2016). Evolutionary history of chloridoid grasses estimated from 122 nuclear loci. Molecular Phylogenetics and Evolution.

Gardner, E. M. et al. (2016). Low-Coverage, Whole-Genome Sequencing of Artocarpus camansi (Moraceae) for Phylogenetic Marker Development and Gene Discovery. Applications in Plant Sciences.

Gelabert, P. et al. (2016). Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain. Proceedings of the National Academy of Sciences.

Giolai, M. et al. (2016). Targeted capture and sequencing of gene-sized DNA molecules. BioTechniques.

Glenn, T. C. et al. (2016). Capturing Darwin’s dream. Molecular Ecology Resources.

Haouchar, D. et al. (2016). Ancient DNA reveals complexity in the evolutionary history and taxonomy of the endangered Australian brush-tailed bettongs (Bettongia: Marsupialia: Macropodidae: Potoroinae). Biodiversity and Conservation.

Hart, M. L. et al. (2016). Retrieval of hundreds of nuclear loci from herbarium specimens. Taxon.

Hawkins, M. T. R. et al. (2016). In-solution hybridization for mammalian mitogenome enrichment: pros, cons and challenges associated with multiplexing degraded DNA. Molecular Ecology Resources.

Heintzman, P. D. et al. (2016). Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada. Proceedings of the National Academy of Sciences.

Heyduk, K. et al. (2016). Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae). Molecular Phylogenetics and Evolution.

Heyduk, K. et al. (2016). Phylogenomic analyses of species relationships in the genus Sabal (Arecaceae) using targeted sequence capture. Biological Journal of the Linnean Society.

Hoffberg, S. L. et al. (2016). RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data. Molecular Ecology Resources.

Holtz, Y. et al. (2016). Genotyping by Sequencing Using Specific Allelic Capture to Build a High-Density Genetic Map of Durum Wheat. PLOS ONE.

Hosner, P. A. et al. (2016). Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes). Molecular Biology and Evolution.

Hosner, P. A. et al. (2016). Rapid and recent diversification of curassows, guans, and chachalacas (Galliformes: Cracidae) out of Mesoamerica: Phylogeny inferred from mitochondrial, intron, and ultraconserved element sequences. Molecular Phylogenetics and Evolution.

Hugall, A. F. et al. (2016). An Exon-Capture System for the Entire Class Ophiuroidea. Molecular Biology and Evolution.

Johnson, M. G. et al. (2016). HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment. Applications in Plant Sciences.

Kingsley, E. P. et al. (2016). Multiple genetic changes underlie the evolution of long-tailed forest deer mice. BioRxiv.

Lim, H. C. et al. (2016). High-throughput SNP genotyping of historical and modern samples of five bird species via sequence capture of ultraconserved elements. Molecular Ecology Resources.

Linkem, C. W. et al. (2016). Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae). Systematic Biology.

Manthey, J. D. et al. (2016). Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga). Systematic Biology.

McCartney-Melstad, E. et al. (2016). Exon capture optimization in amphibians with large genomes. Molecular Ecology Resources.

McCormack, J. E. et al. (2016). Sequence capture of ultraconserved elements from bird museum specimens. Molecular Ecology Resources.

Meiklejohn, K. A. et al. (2016). Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods. Systematic Biology.

Mitchell, K. J. et al. (2016). Ancient DNA from the extinct South American giant glyptodont Doedicurus sp. (Xenarthra: Glyptodontidae) reveals that glyptodonts evolved from Eocene armadillos. Molecular Ecology.

Mitchell, K. J. et al. (2016). Ancient mitochondrial genomes clarify the evolutionary history of New Zealand’s enigmatic acanthisittid wrens. Molecular Phylogenetics and Evolution.

Moyle, R. G. et al. (2016). Tectonic collision and uplift of Wallacea triggered the global songbird radiation. Nature Communications.

Nistelberger, H. M. et al. (2016). The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains. Scientific Reports.

O’Sullivan, N. J. et al. (2016). A whole mitochondria analysis of the Tyrolean Iceman’s leather provides insights into the animal sources of Copper Age clothing. Scientific Reports.

Paijmans, J. L. A. et al. (2016). Impact of enrichment conditions on cross-species capture of fresh and degraded DNA. Molecular Ecology Resources.

Persons, N. W. et al. (2016). Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences. Molecular Phylogenetics and Evolution.

Portik, D. M. et al. (2016). An evaluation of transcriptome-based exon capture for frog phylogenomics across multiple scales of divergence (Class: Amphibia, Order: Anura). Molecular Ecology Resources.

Roffler, G. H. et al. (2016). SNP discovery in candidate adaptive genes using exon capture in a free-ranging alpine ungulate. Molecular Ecology Resources.

Schmickl, R. et al. (2016). Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae). Molecular Ecology Resources.

Schweizer, R. M. et al. (2016). Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in grey wolves. Molecular Ecology.

Shen, S. Q. et al. (2016). Massively parallel cis-regulatory analysis in the mammalian central nervous system. Genome Research.

Steuernagel, B. et al. (2016). Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture. Nature Biotechnology.

Syring, J. V. et al. (2016). Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome. Frontiers in Plant Science.

Teasdale, L. C. et al. (2016). Identification and qualification of 500 nuclear, single-copy, orthologous genes for the Eupulmonata (Gastropoda) using transcriptome sequencing and exon capture. Molecular Ecology Resources.

Verfaillie, A. et al. (2016). Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic. Genome Research.

Wales, N. et al. (2016). The limits and potential of paleogenomic techniques for reconstructing grapevine domestication. Journal of Archaeological Science.

West, A. R. (2016). Mitogenome of the extinct helmeted musk ox, Bootherium bombifrons. Mitochondrial DNA Part B.

Witek, K. et al. (2016). Accelerated cloning of a potato late blight-resistance gene using RenSeq and SMRT sequencing. Nature Biotechnology.

Yuan, H. et al. (2016). Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms. Molecular Ecology Resources.

Zarza, E. et al. (2016). Hidden histories of gene flow in highland birds revealed with genomic markers. Molecular Ecology.

Allentoft, M. E. et al. (2015). Population genomics of Bronze Age Eurasia. Nature.

Ávila-Arcos, M. C. et al. (2015). Comparative performance of two whole-genome capture methodologies on ancient DNA Illumina libraries. Methods in Ecology and Evolution.

Crawford, N. G. et al. (2015). A phylogenomic analysis of turtles. Molecular Phylogenetics and Evolution.

Faircloth, B. C. et al. (2015). Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera. Molecular Ecology Resources.

Folk, R. A. et al. (2015). A Protocol for Targeted Enrichment of Intron-Containing Sequence Markers for Recent Radiations: A Phylogenomic Example from Heuchera (Saxifragaceae). Applications in Plant Sciences.

Giarla, T. C. et al. (2015). The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews. Systematic Biology.

Grover, C. E. et al. (2015). Molecular confirmation of species status for the allopolyploid cotton species, Gossypium ekmanianum Wittmack. Genetic Resources and Crop Evolution.

Grover, C. E. et al. (2015). Re-evaluating the phylogeny of allopolyploid Gossypium L. Molecular Phylogenetics and Evolution.

King, R. et al. (2015). Mutation Scanning in Wheat by Exon Capture and Next-Generation Sequencing. PLOS ONE.

Kirillova, I. V. et al. (2015). An ancient bison from the mouth of the Rauchua River (Chukotka, Russia). Quaternary Research.

Kistler, L. et al. (2015). Comparative and population mitogenomic analyses of Madagascar’s extinct, giant ‘subfossil’ lemurs. Journal of Human Evolution.

Kistler, L. et al. (2015). Gourds and squashes (Cucurbita spp.) adapted to megafaunal extinction and ecological anachronism through domestication. Proceedings of the National Academy of Sciences.

Kollias, S. et al. (2015). Low cost sequencing of mitogenomes from museum samples using baits capture and Ion Torrent. Conservation Genetics Resources.

Leaché, A. D. et al. (2015). Phylogenomics of Phrynosomatid Lizards: Conflicting Signals from Sequence Capture versus Restriction Site Associated DNA Sequencing. Genome Biology and Evolution.

Li, F.-W. et al. (2015). Phytochrome diversity in green plants and the origin of canonical plant phytochromes. Nature Communications.

Mandel, J. R. et al. (2015). Using phylogenomics to resolve mega-families: An example from Compositae. Journal of Systematics and Evolution.

Motti, J. M. B. et al. (2015). Primer genoma mitocondrial en restos humanos de la Costa de Santa Cruz, Argentina. Magallania (Punta Arenas).

Nicholls, J. A. et al. (2015). Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae). Frontiers in Plant Science.

O’Geen, H. et al. (2015). A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture. Nucleic Acids Research.

Olalde, I. et al. (2015). A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures. Molecular Biology and Evolution.

Poortvliet, M. et al. (2015). A dated molecular phylogeny of manta and devil rays (Mobulidae) based on mitogenome and nuclear sequences. Molecular Phylogenetics and Evolution.

Sans, M. et al. (2015). A South American Prehistoric Mitogenome: Context, Continuity, and the Origin of Haplogroup C1d. PLOS ONE.

Schroeder, H. et al. (2015). Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean. Proceedings of the National Academy of Sciences.

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