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Over 300 Publications and Counting

Researchers from around the globe publish multiple papers per month in peer-reviewed journals using products from Arbor Biosciences.

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J-S. Kim et al. (2015). Transcriptional profiling of thymidine-producing strain recombineered from Escherichia coli BL21. American Journal of Botany

J-S. Kim et al. (2015). Deoxycytidine production by a metabolically engineered Escherichia coli strain. Microbial Cell Factories

M.K. Yadav et al. (2015). The Small Molecule DAM Inhibitor, Pyrimidinedione, Disrupts Streptococcus pneumoniae Biofilm Growth In Vitro. PLoS One

B. Shin & W. Park. (2015). Synergistic Effect of Oleanolic Acid on Aminoglycoside Antibiotics againstAcinetobacter baumannii. PLoS One

U. Gautam et al. (2015). In-Vivo Gene Signatures ofMycobacterium tuberculosis in C3HeB/FeJ Mice. PLoS One

S. Kim et al. (2015). Pseudomonas aeruginosaDesB Promotes Staphylococcus aureus Growth Inhibition in Coculture by Controlling the Synthesis of HAQs. PLoS One

J.M.J. Favela-Hernandez et al. (2015). Potential Mechanism of Action of 3′-Demethoxy-6-O-demethyl-isoguaiacin on Methicillin Resistant Staphylococcus aureus. Molecules

J. Kovac et al. (2015). Antibiotic Resistance Modulation and Modes of Action of (-)-α-Pinene inCampylobacter jejuni. PLoS One

A. Rahmani-Badi et al. (2015). Dissection of the cis-2-decenoic acid signaling network inPseudomonas aeruginosa using microarray technique. Frontiers in Microbiology

O.H. Donohoe et al. (2015). Identification and Characterization of Cyprinid Herpesvirus-3 (CyHV-3) Encoded MicroRNAs. PLoS One

R. Zoschke & A. Barkan. (2015). Genome-wide analysis of thylakoid-bound ribosomes in maize reveals principles of cotranslational targeting to the thylakoid membrane. PNAS

A. McGillivray et al. (2015). TheMycobacterium tuberculosis Clp Gene Regulator Is Required for in Vitro Reactivation from Hypoxia-induced Dormancy. Journal of Biological Chemistry

A. Clemente-Soto, et al. (2014). Potential Mechanism of Action of meso-Dihydroguaiaretic Acid onMycobacterium tuberculosis H37Rv. Molecules

H. Trigui, et al. (2014). A regulatory feedback loop between RpoS and SpoT supports the survival of Legionella pneumophila in water. Applied and Environmental Microbiology

S. Park, et al. (2014). Metabolic engineering of Corynebacterium glutamicum for L-arginine production. Nature Communications

M. Kim, et al. (2014). Development of a phylogenetic microarray for comprehensive analysis of ruminal bacterial communities. Journal of Applied Microbiology

M. Laranjo, et al. (2014). Genes commonly involved in acid tolerance are not overexpressed in the plant microsymbiont Mesorhizobium loti MAFF303099 upon acidic shock. Applied Microbiology and Biotechnology

D. Fox, et al. (2014). Sub-Inhibitory Fosmidomycin Exposures Elicits Oxidative Stress in Salmonella enterica Serovar typhimurium LT2. PLOS One

Z. Wu, et al. (2014). Genetic Diversity and Antimicrobial Susceptibility of Campylobacter jejuni Isolates Associated with Sheep Abortion in the United States and Great Britain. Journal of Clinical Microbiology

K Hammani and A. Barkan. (2014). An mTERF domain protein functions in group II intron splicing in maize chloroplasts. NAR

Alda, F. et al. (2018). Mitogenomic divergence between three pairs of putative geminate fishes from Panama. Mitochondrial DNA Part B.

Alfaro, M. E. et al. (2018). Explosive diversification of marine fishes at the Cretaceous–Palaeogene boundary. Nature Ecology & Evolution.

Andermann, T. et al. (2018). Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements. BioRxiv.

Arora, S. et al. (2018). Resistance gene discovery and cloning by sequence capture and association genetics. BioRxiv.

Aylward, M. L. et al. (2018). A novel environmental DNA (eDNA) sampling method for aye-ayes from their feeding traces. BioRxiv.

Bonett, R. M. et al. (2018). Rapid phenotypic evolution following shifts in life cycle complexity. Proc. R. Soc. B.

Bover, P. et al. (2018). Molecular phylogenetics supports the origin of an endemic Balearic shrew lineage (Nesiotites) coincident with the Messinian Salinity Crisis. Molecular Phylogenetics and Evolution.

Bryson Jr, R. W. et al. (2018). Phylogenomic insights into the diversification of salamanders in the Isthmura bellii group across the Mexican highlands. Molecular Phylogenetics and Evolution.

Campbell, K. L. et al. (2018). Altered hemoglobin co-factor sensitivity does not underlie the evolution of derived fossorial specializations in the family Talpidae. Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology.

Drosou, K. et al. (2018). The kinship of two 12th Dynasty mummies revealed by ancient DNA sequencing. Journal of Archaeological Science: Reports.

Eriksson, J. S. et al. (2018). Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae). BMC Evolutionary Biology.

Gates, D. J. et al. (2018). Filtering of target sequence capture individuals facilitates species tree construction in the plant subtribe Iochrominae (Solanaceae). Molecular Phylogenetics and Evolution.

Gernandt, D. S. et al. (2018). Multi-locus phylogenetics, lineage sorting, and reticulation in Pinus subsection Australes. American Journal of Botany.

Gorden, E. M. et al. (2018). Repair of DNA damage caused by cytosine deamination in mitochondrial DNA of forensic case samples. Forensic Science International: Genetics.

Günther, T. et al. (2018). Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation. PLOS Biology.

Hedin, M. et al. (2018). Phylogenomic reclassification of the world’s most venomous spiders (Mygalomorphae, Atracinae), with implications for venom evolution. Scientific Reports.

Heintzman, P.D. et al. (2018). A new genus of horse from Pleistocene North America. eLife.

Honap, T. P. et al. (2018). Mycobacterium leprae genomes from naturally infected nonhuman primates. PLOS Neglected Tropical Diseases.

Jensen, E. L. et al. (2018). Temporal mitogenomics of the Galapagos giant tortoise from Pinzón reveals potential biases in population genetic inference. Journal of Heredity.

Loreille, O. et al. (2018). Biological Sexing of a 4000-Year-Old Egyptian Mummy Head to Assess the Potential of Nuclear DNA Recovery from the Most Damaged and Limited Forensic Specimens. Genes.

Marciniak, S. et al. (2018). A multi-faceted anthropological and genomic approach to framing Plasmodium falciparum malaria in Imperial period central-southern Italy (1st–4th c. CE). Journal of Anthropological Archaeology.

Martin, R. P. et al. (2018). Light in the Darkness: New Perspective on Lanternfish Relationships and Classification Using Genomic and Morphological Data. Molecular Phylogenetics and Evolution.

McCartney-Melstad, E. et al. (2018). Genomic Data from an Endangered Amphibian Reveal Unforeseen Consequences of Fragmentation by Roads. BioRxiv.

Morales, A. E. et al. (2018). Evidence that Myotis lucifugus ‘subspecies’ are five non-sister species, despite gene flow. Systematic Biology.

Morales‐Briones, D. F. et al. (2018). Phylogenomic analyses reveal a deep history of hybridization and polyploidy in the Neotropical genus Lachemilla (Rosaceae). New Phytologist.

Muñoz-Rodríguez, P. et al. (2018). Reconciling Conflicting Phylogenies in the Origin of Sweet Potato and Dispersal to Polynesia. Current Biology.

Paff, T. et al. (2018). Diagnostic yield of a targeted gene panel in primary ciliary dyskinesia patients. Human Mutation.

Pfeifer, S. P. et al. (2018). The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow. Molecular Biology and Evolution.

Phuong, M. A. et al. (2018). Targeted sequencing of venom genes from cone snail genomes improves understanding of conotoxin molecular evolution. Molecular Biology and Evolution.

Quattrini, A. et al. (2018). Universal target-enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long-standing problems. Molecular Ecology Resources.

Ross, Z. P. et al. (2018). The paradox of HBV evolution as revealed from a 16th century mummy. PLOS Pathogens.

Schroeder, H. et al. (2018). Origins and genetic legacies of the Caribbean Taino. Proceedings of the National Academy of Sciences.

Schweizer, R. M. et al. (2018). Natural selection and origin of a melanistic allele in North American gray wolves. Molecular Biology and Evolution.

Stubbs, R. L. et al. (2018). Pseudo-parallel patterns of disjunctions in an Arctic-alpine plant lineage. Molecular Phylogenetics and Evolution.

Veeramah, K. R. et al. (2018). Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria. Proceedings of the National Academy of Sciences.

White, L. C. et al. (2018). Ancient mitochondrial genomes reveal the demographic history and phylogeography of the extinct, enigmatic thylacine (Thylacinus cynocephalus). Journal of Biogeography.

Wolf, P. G. et al. (2018). Target sequence capture of nuclear-encoded genes for phylogenetic analysis in ferns. Applications in Plant Sciences.

Younger, J. L. et al. (2018). Hidden diversity of forest birds in Madagascar revealed using integrative taxonomy. Molecular Phylogenetics and Evolution.

Alexander, A. M. et al. (2017). Genomic data reveals potential for hybridization, introgression, and incomplete lineage sorting to confound phylogenetic relationships in an adaptive radiation of narrow-mouth frogs. Evolution.

Arcila, D. et al. (2017). Genome-wide interrogation advances resolution of recalcitrant groups in the tree of life. Nature Ecology & Evolution.

Baca, S. M. et al. (2017). Ultraconserved elements show utility in phylogenetic inference of Adephaga (Coleoptera) and suggest paraphyly of ‘Hydradephaga’: Phylogeny of Adephaga inferred with UCEs. Systematic Entomology.

Borowiec, M. L. (2017). Convergent evolution of the army ant syndrome and congruence in big-data phylogenetics. BioRxiv.

Brabham, H. J. et al. (2017). An ancient integration in a plant NLR is maintained as a trans-species polymorphism. BioRxiv.

Branstetter, M. G. et al. (2017). Enriching the ant tree of life: enhanced UCE bait set for genome-scale phylogenetics of ants and other Hymenoptera. Methods in Ecology and Evolution.

Bryson, R. W. et al. (2017). A phylogenomic perspective on the biogeography of skinks in the Plestiodon brevirostris group inferred from target enrichment of ultraconserved elements. Journal of Biogeography.

Burrel, S. et al. (2017). Ancient Recombination Events between Human Herpes Simplex Viruses. Molecular Biology and Evolution.

Burress, E. D. et al. (2017). Phylogenomics of pike cichlids (Cichlidae: Crenicichla): the rapid evolution and trophic diversification of an incipient species flock. Journal of Evolutionary Biology.

Burridge, A. J. et al. (2017). Conversion of array-based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (Triticum aestivum). Plant Biotechnology Journal.

Campillo, L. C. et al. (2017). Genomic data resolve gene tree discordance in spiderhunters (Nectariniidae, Arachnothera ). Molecular Phylogenetics and Evolution.

Chakrabarty, P. et al. (2017). Phylogenomic Systematics of Ostariophysan Fishes: Ultraconserved Elements Support the Surprising Non-Monophyly of Characiformes. Systematic Biology.

Christmas, M. J. et al. (2017). Targeted capture to assess neutral genomic variation in the narrow-leaf hopbush across a continental biodiversity refugium. Scientific Reports.

Chyleński, M. et al. (2017). Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC. BMC Evolutionary Biology.

Crowl, A. A. et al. (2017). Embracing discordance: Phylogenomic analyses provide evidence for allopolyploidy leading to cryptic diversity in a Mediterranean Campanula (Campanulaceae) clade. Evolution.

Cruz-Dávalos, D. I. et al. (2017). Experimental conditions improving in-solution target enrichment for ancient DNA. Molecular Ecology Resources.

Dam, M. H. V. et al. (2017). Ultraconserved elements (UCEs) resolve the phylogeny of Australasian smurf-weevils. PLOS ONE.

Dávalos, D. I. C. et al. (2017). In-solution Y-chromosome capture-enrichment on ancient DNA libraries. BioRxiv.

Devault, A. M. et al. (2017). A molecular portrait of maternal sepsis from Byzantine Troy. ELife.

Duggan, A. T. et al. (2017). Genetic Discontinuity between the Maritime Archaic and Beothuk Populations in Newfoundland, Canada. Current Biology.

Elbers, J. P. et al. (2017). Population genetic inferences using immune gene SNPs mirror patterns inferred by microsatellites. Molecular Ecology Resources.

Eriksson, J. S. et al. (2017). A cryptic species produced by autopolyploidy and subsequent introgression involving Medicago prostrata (Fabaceae). Molecular Phylogenetics and Evolution.

Esselstyn, J. A. et al. (2017). Investigating Difficult Nodes in the Placental Mammal Tree with Expanded Taxon Sampling and Thousands of Ultraconserved Elements. Genome Biology and Evolution.

Evanitsky, M. N. et al. (2017). Mitochondrial genomes of the regionally extinct Nittany Lion (Puma concolor from Pennsylvania). BioRxiv.

Fehren-Schmitz, L. et al. (2017). Genetic Ancestry of Rapanui before and after European Contact. Current Biology.

Fiddes, I. T. et al. (2017). Human-specific NOTCH-like genes in a region linked to neurodevelopmental disorders affect cortical neurogenesis. BioRxiv.

Figueiro, G. et al. (2017). Análisis Del Genoma Mitocondrial De Dos Individuos Inhumados En El Sitio Arqueológico Cg14e01 “ISLA Larga” (ROCHA, Uruguay). Revista Argentina de Antropología Biológica.

Foerster, D. et al. (2017). Targeted re-sequencing of coding DNA sequences for SNP discovery in non-model species. BioRxiv.

Folk, R. A. et al. (2017). Ancestral Gene Flow and Parallel Organellar Genome Capture Result in Extreme Phylogenomic Discord in a Lineage of Angiosperms. Systematic Biology.

Froese, D. et al. (2017). Fossil and genomic evidence constrains the timing of bison arrival in North America. Proceedings of the National Academy of Sciences.

Gallagher, J. P. et al. (2017). A New Species of Cotton from Wake Atoll, Gossypium stephensii (Malvaceae). Systematic Botany.

García, N. et al. (2017). Deep reticulation and incomplete lineage sorting obscure the diploid phylogeny of rain-lilies and allies (Amaryllidaceae tribe Hippeastreae). Molecular Phylogenetics and Evolution.
Gaudry, M. J. et al. (2017). Evolution of UCP1 Transcriptional Regulatory Elements Across the Mammalian Phylogeny. Frontiers in Physiology.

Gaudry, M. J. et al. (2017). Inactivation of thermogenic UCP1 as a historical contingency in multiple placental mammal clades. Science Advances.

Giolai, M. et al. (2017). Comparative analysis of targeted long read sequencing approaches for characterization of a plant’s immune receptor repertoire. BMC Genomics.

Gray, H. W. I. et al. (2017). Cryptic Lineage Differentiation Among Indo-Pacific Bottlenose Dolphins (Tursiops aduncus) in the Northwest Indian Ocean. Molecular Phylogenetics and Evolution.

Grealy, A. et al. (2017). Eggshell palaeogenomics: Palaeognath evolutionary history revealed through ancient nuclear and mitochondrial DNA from Madagascan elephant bird (Aepyornis sp.) eggshell. Molecular Phylogenetics and Evolution.

Grover, C. E. et al. (2017). Nucleotide diversity in the two co-resident genomes of allopolyploid cotton. Plant Systematics and Evolution.

Gutiérrez, E. E. et al. (2017). A gene-tree test of the traditional taxonomy of American deer: the importance of voucher specimens, geographic data, and dense sampling. ZooKeys.

Heintzman, P. D. et al. (2017). A new genus of horse from Pleistocene North America. BioRxiv.

Hulsey, C. D. et al. (2017). Phylogenomic analysis of Lake Malawi cichlid fishes: Further evidence that the three-stage model of diversification does not fit. Molecular Phylogenetics and Evolution.

Ješovnik, A. et al. (2017). Phylogenomic species delimitation and host-symbiont coevolution in the fungus-farming ant genus SericomyrmexMayr (Hymenoptera: Formicidae): ultraconserved elements (UCEs) resolve a recent radiation. Systematic Entomology.

Jiang, J. et al. (2017). Gene markers for exon capture and phylogenomics in ray-finned fishes. BioRxiv.

Juras, A. et al. (2017). Diverse origin of mitochondrial lineages in Iron Age Black Sea Scythians. Scientific Reports.

Juras, A. et al. (2017). Investigating kinship of Neolithic post-LBK human remains from Krusza Zamkowa, Poland using ancient DNA. Forensic Science International: Genetics.

Kamneva, O. K. et al. (2017). Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing. BMC Evolutionary Biology.

Karpinski, E. et al. (2017). Molecular identification of paleofeces from Bechan Cave, southeastern Utah, USA. Quaternary International.

Kennett, D. J. et al. (2017). Archaeogenomic evidence reveals prehistoric matrilineal dynasty. Nature Communications.

Kingsley, E. P. et al. (2017). The ultimate and proximate mechanisms driving the evolution of long tails in forest deer mice. Evolution.

Kirillova, I. V. et al. (2017). Discovery of the skull of Stephanorhinus kirchbergensi (Jäger, 1839) above the Arctic Circle. Quaternary Research.

Kistler, L. et al. (2017). A massively parallel strategy for STR marker development, capture, and genotyping. Nucleic Acids Research.

Kohrn, B. F. et al. (2017). An Efficient Pipeline to Generate Data for Studies in Plastid Population Genomics and Phylogeography. Applications in Plant Sciences.

K.Yu, T. et al. (2017). A bioinformatic pipeline for NGS data analysis and mutation calling in human solid tumors. Biomeditsinskaya Khimiya.

Lan, T. et al. (2017). Evolutionary history of enigmatic bears in the Tibetan Plateau–Himalaya region and the identity of the yeti. Proc. R. Soc. B.

Landis, J. B. et al. (2017). Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae). BMC Genomics.

Lindo, J. et al. (2017). Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity. Proceedings of the National Academy of Sciences.

Liu, J. et al. (2017). Multilocus DNA barcoding – Species Identification with Multilocus Data. BioRxiv.

Longo, S. J. et al. (2017). Phylogenomic analysis of a rapid radiation of misfit fishes (Syngnathiformes) using ultraconserved elements. Molecular Phylogenetics and Evolution.

Marshall, C. et al. (2017). Performance evaluation of a mitogenome capture and illumina sequencing protocol using non-probative, case-type skeletal samples: Implications for the use of a positive control in a next-generation sequencing procedure. Forensic Science International: Genetics.

Maschenko, E. N. et al. (2017). The Zhenya Mammoth (Mammuthus primigenius (Blum.)): Taphonomy, geology, age, morphology and ancient DNA of a 48,000 year old frozen mummy from western Taimyr, Russia. Quaternary International.

Medina, R. et al. (2017). Evolutionary dynamism in bryophytes: Phylogenomic inferences confirm rapid radiation in the moss family Funariaceae. Molecular Phylogenetics and Evolution.

Mohandesan, E. et al. (2017). Combined hybridization capture and shotgun sequencing for ancient DNA analysis of extinct wild and domestic dromedary camel. Molecular Ecology Resources.

Molto, J. E. et al. (2017). Complete Mitochondrial Genome Sequencing of a Burial from a Romano–Christian Cemetery in the Dakhleh Oasis, Egypt: Preliminary Indications. Genes.

Moore, A. et al. (2017). Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo (Caryophyllales). BioRxiv.

Morales, A. E. et al. (2017). Speciation with Gene Flow in North American Myotis Bats. Systematic Biology.

Nielsen, E. E. et al. (2017). Extracting DNA from ‘jaws’: high yield and quality from archived tiger shark (Galeocerdo cuvier) skeletal material. Molecular Ecology Resources.

Onar, V. et al. (2017). Did the historical range of the European bison (Bison bonasus L.) extend further south?—a new finding from the Yenikapı Metro and Marmaray excavation, Turkey. Mammal Research.

Paijmans, J. L. A. et al. (2017). Evolutionary History of Saber-Toothed Cats Based on Ancient Mitogenomics. Current Biology.

Panzera, A. et al. (2017). Phylogenomic analysis of the Chilean clade of Liolaemus lizards (Squamata: Liolaemidae) based on sequence capture data. PeerJ.

Perry, T. et al. (2017). Ancient DNA analysis of the extinct North American flat-headed peccary ( Platygonus compressus ). Molecular Phylogenetics and Evolution.

Pfeifer, S. P. et al. (2017). The evolutionary history of Nebraska deer mice: local adaptation in the face of strong gene flow. BioRxiv.

Phuong, M. A. et al. (2017). Targeted sequencing of venom genes from cone snail genomes reveals coupling between dietary breadth and conotoxin diversity. BioRxiv.

Pie, M. R. et al. (2017). Phylogenomic Species Delimitation In Microendemic Frogs Of The Brazilian Atlantic Forest. BioRxiv.

Platt, R. N. et al. (2017). Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats. Systematic Biology.

Prebus, M. (2017). Insights into the evolution, biogeography and natural history of the acorn ants, genus Temnothorax Mayr (hymenoptera: Formicidae). BMC Evolutionary Biology.

Ruane, S. et al. (2017). Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens. Molecular Ecology Resources.

Sánchez Barreiro, F. et al. (2017). Characterizing restriction enzyme-associated loci in historic ragweed (Ambrosia artemisiifolia) voucher specimens using custom-designed RNA probes. Molecular Ecology Resources.

Savage, A. E. et al. (2017). Lost but not forgotten: MHC genotypes predict overwinter survival despite depauperate MHC diversity in a declining frog. Conservation Genetics.

Shaffer, H. B. et al. (2017). Phylogenomic analyses of 539 highly informative loci dates a fully resolved time tree for the major clades of living turtles (Testudines). Molecular Phylogenetics and Evolution.

Singhal, S. et al. (2017). Squamate Conserved Loci (SqCL): A unified set of conserved loci for phylogenomics and population genetics of squamate reptiles. Molecular Ecology Resources.

Song, S. et al. (2017). Species delimitation and phylogenetic reconstruction of the sinipercids (Perciformes: Sinipercidae) based on target enrichment of thousands of nuclear coding sequences. Molecular Phylogenetics and Evolution.

Souza, C. A. et al. (2017). Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus). Scientific Reports.

Starrett, J. et al. (2017). High phylogenetic utility of an ultraconserved element probe set designed for Arachnida. Molecular Ecology Resources.

Ströher, P. R. et al. (2017). The mitochondrial genome of Octostruma stenognatha and its phylogenetic implications. Insectes Sociaux.

Tennessen, J. A. et al. (2017). A Targeted Capture Linkage Map Anchors the Genome of the Schistosomiasis Vector Snail, Biomphalaria glabrata. G3: Genes, Genomes, Genetics.

Thomas, J. E. et al. (2017). An ‛Aukward’ Tale: A Genetic Approach to Discover the Whereabouts of the Last Great Auks. Genes.

Trimpert, J. et al. (2017). A phylogenomic analysis of Marek’s disease virus (MDV) reveals independent paths to virulence in Eurasia and North America. Evolutionary Applications.

Vezzulli, L. et al. (2017). Whole-Genome Enrichment Provides Deep Insights into Vibrio cholerae Metagenome from an African River. Microbial Ecology.

vonHoldt, B. M. et al. (2017). Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs. Science Advances.

Wang, N. et al. (2017). Historical relationships of three enigmatic phasianid genera (Aves: Galliformes) inferred using phylogenomic and mitogenomic data. Molecular Phylogenetics and Evolution.

Wei, N. et al. (2017). Genetic mapping and phylogenetic analysis reveal intraspecific variation in sex chromosomes of the Virginian strawberry. Journal of Heredity.

Wei, N. et al. (2017). Present-day sympatry belies the evolutionary origin of a high-order polyploid. New Phytologist.

White, W. T. et al. (2017). Phylogeny of the manta and devilrays (Chondrichthyes: mobulidae), with an updated taxonomic arrangement for the family. Zoological Journal of the Linnean Society.

Zarza, E. et al. (2017). Bridging multilocus species delimitation and DNA barcoding through target enrichment of UCEs: A case study with Mexican highland frogs. BioRxiv.

Ali, O. A. et al. (2016). RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping. Genetics.

Bailey, S. E. et al. (2016). The use of museum samples for large-scale sequence capture: a study of congeneric horseshoe bats (family Rhinolophidae). Biological Journal of the Linnean Society.

Blaimer, B. B. et al. (2016). Phylogenomics, biogeography and diversification of obligate mealybug-tending ants in the genus Acropyga. Molecular Phylogenetics and Evolution.

Blaimer, B. B. et al. (2016). Sequence Capture and Phylogenetic Utility of Genomic Ultraconserved Elements Obtained from Pinned Insect Specimens. PLOS ONE.

Branstetter, M. G. et al. (2016). Into the tropics: phylogenomics and evolutionary dynamics of a contrarian clade of ants. BioRxiv.

Branstetter, M. G. et al. (2016). Phylogenomic Analysis of Ants, Bees and Stinging Wasps: Improved Taxon Sampling Enhances Understanding of Hymenopteran Evolution. BioRxiv.

Bryson, R. W. et al. (2016). Target enrichment of thousands of ultraconserved elements sheds new light on early relationships within New World sparrows (Aves: Passerellidae). The Auk.

Campana, M. G. et al. (2016). Simultaneous identification of host, ectoparasite and pathogen DNA via in-solution capture. Molecular Ecology Resources.

Christmas, M. J. et al. (2016). Finding needles in a genomic haystack: targeted capture identifies clear signatures of selection in a nonmodel plant species. Molecular Ecology.

Delsuc, F. et al. (2016). The phylogenetic affinities of the extinct glyptodonts. Current Biology.

Dowle, E. J. et al. (2016). Targeted gene enrichment and high-throughput sequencing for environmental biomonitoring: a case study using freshwater macroinvertebrates. Molecular Ecology Resources.

Duggan, A. T. et al. (2016). 17th Century Variola Virus Reveals the Recent History of Smallpox. Current Biology.

Duvall, M. R. et al. (2016). Phylogenomics and Plastome Evolution of the Chloridoid Grasses (Chloridoideae: Poaceae). International Journal of Plant Sciences.

Enk, J. et al. (2016). Mammuthus Population Dynamics in Late Pleistocene North America: Divergence, Phylogeography, and Introgression. Frontiers in Ecology and Evolution.

Fijarczyk, A. et al. (2016). Selective Landscapes in newt Immune Genes Inferred from Patterns of Nucleotide Variation. Genome Biology and Evolution.

Fisher, A. E. et al. (2016). Evolutionary history of chloridoid grasses estimated from 122 nuclear loci. Molecular Phylogenetics and Evolution.

Gardner, E. M. et al. (2016). Low-Coverage, Whole-Genome Sequencing of Artocarpus camansi (Moraceae) for Phylogenetic Marker Development and Gene Discovery. Applications in Plant Sciences.

Gelabert, P. et al. (2016). Mitochondrial DNA from the eradicated European Plasmodium vivax and P. falciparum from 70-year-old slides from the Ebro Delta in Spain. Proceedings of the National Academy of Sciences.

Giolai, M. et al. (2016). Targeted capture and sequencing of gene-sized DNA molecules. BioTechniques.

Glenn, T. C. et al. (2016). Capturing Darwin’s dream. Molecular Ecology Resources.

Haouchar, D. et al. (2016). Ancient DNA reveals complexity in the evolutionary history and taxonomy of the endangered Australian brush-tailed bettongs (Bettongia: Marsupialia: Macropodidae: Potoroinae). Biodiversity and Conservation.

Hart, M. L. et al. (2016). Retrieval of hundreds of nuclear loci from herbarium specimens. Taxon.

Hawkins, M. T. R. et al. (2016). In-solution hybridization for mammalian mitogenome enrichment: pros, cons and challenges associated with multiplexing degraded DNA. Molecular Ecology Resources.

Heintzman, P. D. et al. (2016). Bison phylogeography constrains dispersal and viability of the Ice Free Corridor in western Canada. Proceedings of the National Academy of Sciences.

Heyduk, K. et al. (2016). Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae). Molecular Phylogenetics and Evolution.

Heyduk, K. et al. (2016). Phylogenomic analyses of species relationships in the genus Sabal (Arecaceae) using targeted sequence capture. Biological Journal of the Linnean Society.

Hoffberg, S. L. et al. (2016). RADcap: sequence capture of dual-digest RADseq libraries with identifiable duplicates and reduced missing data. Molecular Ecology Resources.

Holtz, Y. et al. (2016). Genotyping by Sequencing Using Specific Allelic Capture to Build a High-Density Genetic Map of Durum Wheat. PLOS ONE.

Hosner, P. A. et al. (2016). Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes). Molecular Biology and Evolution.

Hosner, P. A. et al. (2016). Rapid and recent diversification of curassows, guans, and chachalacas (Galliformes: Cracidae) out of Mesoamerica: Phylogeny inferred from mitochondrial, intron, and ultraconserved element sequences. Molecular Phylogenetics and Evolution.

Hugall, A. F. et al. (2016). An Exon-Capture System for the Entire Class Ophiuroidea. Molecular Biology and Evolution.

Johnson, M. G. et al. (2016). HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment. Applications in Plant Sciences.

Kingsley, E. P. et al. (2016). Multiple genetic changes underlie the evolution of long-tailed forest deer mice. BioRxiv.

Lim, H. C. et al. (2016). High-throughput SNP genotyping of historical and modern samples of five bird species via sequence capture of ultraconserved elements. Molecular Ecology Resources.

Linkem, C. W. et al. (2016). Detecting the Anomaly Zone in Species Trees and Evidence for a Misleading Signal in Higher-Level Skink Phylogeny (Squamata: Scincidae). Systematic Biology.

Manthey, J. D. et al. (2016). Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga). Systematic Biology.

McCartney-Melstad, E. et al. (2016). Exon capture optimization in amphibians with large genomes. Molecular Ecology Resources.

McCormack, J. E. et al. (2016). Sequence capture of ultraconserved elements from bird museum specimens. Molecular Ecology Resources.

Meiklejohn, K. A. et al. (2016). Analysis of a Rapid Evolutionary Radiation Using Ultraconserved Elements: Evidence for a Bias in Some Multispecies Coalescent Methods. Systematic Biology.

Mitchell, K. J. et al. (2016). Ancient DNA from the extinct South American giant glyptodont Doedicurus sp. (Xenarthra: Glyptodontidae) reveals that glyptodonts evolved from Eocene armadillos. Molecular Ecology.

Mitchell, K. J. et al. (2016). Ancient mitochondrial genomes clarify the evolutionary history of New Zealand’s enigmatic acanthisittid wrens. Molecular Phylogenetics and Evolution.

Moyle, R. G. et al. (2016). Tectonic collision and uplift of Wallacea triggered the global songbird radiation. Nature Communications.

Nistelberger, H. M. et al. (2016). The efficacy of high-throughput sequencing and target enrichment on charred archaeobotanical remains. Scientific Reports.

O’Sullivan, N. J. et al. (2016). A whole mitochondria analysis of the Tyrolean Iceman’s leather provides insights into the animal sources of Copper Age clothing. Scientific Reports.

Paijmans, J. L. A. et al. (2016). Impact of enrichment conditions on cross-species capture of fresh and degraded DNA. Molecular Ecology Resources.

Persons, N. W. et al. (2016). Sorting out relationships among the grouse and ptarmigan using intron, mitochondrial, and ultra-conserved element sequences. Molecular Phylogenetics and Evolution.

Portik, D. M. et al. (2016). An evaluation of transcriptome-based exon capture for frog phylogenomics across multiple scales of divergence (Class: Amphibia, Order: Anura). Molecular Ecology Resources.

Roffler, G. H. et al. (2016). SNP discovery in candidate adaptive genes using exon capture in a free-ranging alpine ungulate. Molecular Ecology Resources.

Schmickl, R. et al. (2016). Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae). Molecular Ecology Resources.

Schweizer, R. M. et al. (2016). Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in grey wolves. Molecular Ecology.

Shen, S. Q. et al. (2016). Massively parallel cis-regulatory analysis in the mammalian central nervous system. Genome Research.

Steuernagel, B. et al. (2016). Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture. Nature Biotechnology.

Syring, J. V. et al. (2016). Targeted Capture Sequencing in Whitebark Pine Reveals Range-Wide Demographic and Adaptive Patterns Despite Challenges of a Large, Repetitive Genome. Frontiers in Plant Science.

Teasdale, L. C. et al. (2016). Identification and qualification of 500 nuclear, single-copy, orthologous genes for the Eupulmonata (Gastropoda) using transcriptome sequencing and exon capture. Molecular Ecology Resources.

Verfaillie, A. et al. (2016). Multiplex enhancer-reporter assays uncover unsophisticated TP53 enhancer logic. Genome Research.

Wales, N. et al. (2016). The limits and potential of paleogenomic techniques for reconstructing grapevine domestication. Journal of Archaeological Science.

West, A. R. (2016). Mitogenome of the extinct helmeted musk ox, Bootherium bombifrons. Mitochondrial DNA Part B.

Witek, K. et al. (2016). Accelerated cloning of a potato late blight-resistance gene using RenSeq and SMRT sequencing. Nature Biotechnology.

Yuan, H. et al. (2016). Target gene enrichment in the cyclophyllidean cestodes, the most diverse group of tapeworms. Molecular Ecology Resources.

Zarza, E. et al. (2016). Hidden histories of gene flow in highland birds revealed with genomic markers. Molecular Ecology.

Allentoft, M. E. et al. (2015). Population genomics of Bronze Age Eurasia. Nature.

Ávila-Arcos, M. C. et al. (2015). Comparative performance of two whole-genome capture methodologies on ancient DNA Illumina libraries. Methods in Ecology and Evolution.

Crawford, N. G. et al. (2015). A phylogenomic analysis of turtles. Molecular Phylogenetics and Evolution.

Faircloth, B. C. et al. (2015). Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera. Molecular Ecology Resources.

Folk, R. A. et al. (2015). A Protocol for Targeted Enrichment of Intron-Containing Sequence Markers for Recent Radiations: A Phylogenomic Example from Heuchera (Saxifragaceae). Applications in Plant Sciences.

Giarla, T. C. et al. (2015). The Challenges of Resolving a Rapid, Recent Radiation: Empirical and Simulated Phylogenomics of Philippine Shrews. Systematic Biology.

Grover, C. E. et al. (2015). Molecular confirmation of species status for the allopolyploid cotton species, Gossypium ekmanianum Wittmack. Genetic Resources and Crop Evolution.

Grover, C. E. et al. (2015). Re-evaluating the phylogeny of allopolyploid Gossypium L. Molecular Phylogenetics and Evolution.

King, R. et al. (2015). Mutation Scanning in Wheat by Exon Capture and Next-Generation Sequencing. PLOS ONE.

Kirillova, I. V. et al. (2015). An ancient bison from the mouth of the Rauchua River (Chukotka, Russia). Quaternary Research.

Kistler, L. et al. (2015). Comparative and population mitogenomic analyses of Madagascar’s extinct, giant ‘subfossil’ lemurs. Journal of Human Evolution.

Kistler, L. et al. (2015). Gourds and squashes (Cucurbita spp.) adapted to megafaunal extinction and ecological anachronism through domestication. Proceedings of the National Academy of Sciences.

Kollias, S. et al. (2015). Low cost sequencing of mitogenomes from museum samples using baits capture and Ion Torrent. Conservation Genetics Resources.

Leaché, A. D. et al. (2015). Phylogenomics of Phrynosomatid Lizards: Conflicting Signals from Sequence Capture versus Restriction Site Associated DNA Sequencing. Genome Biology and Evolution.

Li, F.-W. et al. (2015). Phytochrome diversity in green plants and the origin of canonical plant phytochromes. Nature Communications.

Mandel, J. R. et al. (2015). Using phylogenomics to resolve mega-families: An example from Compositae. Journal of Systematics and Evolution.

Motti, J. M. B. et al. (2015). Primer genoma mitocondrial en restos humanos de la Costa de Santa Cruz, Argentina. Magallania (Punta Arenas).

Nicholls, J. A. et al. (2015). Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae). Frontiers in Plant Science.

O’Geen, H. et al. (2015). A genome-wide analysis of Cas9 binding specificity using ChIP-seq and targeted sequence capture. Nucleic Acids Research.

Olalde, I. et al. (2015). A Common Genetic Origin for Early Farmers from Mediterranean Cardial and Central European LBK Cultures. Molecular Biology and Evolution.

Poortvliet, M. et al. (2015). A dated molecular phylogeny of manta and devil rays (Mobulidae) based on mitogenome and nuclear sequences. Molecular Phylogenetics and Evolution.

Sans, M. et al. (2015). A South American Prehistoric Mitogenome: Context, Continuity, and the Origin of Haplogroup C1d. PLOS ONE.

Schroeder, H. et al. (2015). Genome-wide ancestry of 17th-century enslaved Africans from the Caribbean. Proceedings of the National Academy of Sciences.

Stephens, J. D. et al. (2015). Resolving phylogenetic relationships of the recently radiated carnivorous plant genus Sarracenia using target enrichment. Molecular Phylogenetics and Evolution.

Stephens, J. D. et al. (2015). Species tree estimation of diploid Helianthus (Asteraceae) using target enrichment. American Journal of Botany.

Gernandt, D. S. et al. (2018). Multi-locus phylogenetics, lineage sorting, and reticulation in Pinus subsection Australes. American Journal of Botany.

Jensen, E. L. et al. (2018). Temporal mitogenomics of the Galapagos giant tortoise from Pinzón reveals potential biases in population genetic inference. Journal of Heredity.

Martin, R. P. et al. (2018). Light in the Darkness: New Perspective on Lanternfish Relationships and Classification Using Genomic and Morphological Data. Molecular Phylogenetics and Evolution.

Wolf, P. G. et al. (2018). Target sequence capture of nuclear-encoded genes for phylogenetic analysis in ferns. Applications in Plant Sciences.

Lan, T. et al. (2017). Evolutionary history of enigmatic bears in the Tibetan Plateau–Himalaya region and the identity of the yeti. Proc. R. Soc. B.

Ruane, S. et al. (2017). Phylogenomics using formalin-fixed and 100+ year-old intractable natural history specimens. Molecular Ecology Resources.

Singhal, S. et al. (2017). Squamate Conserved Loci (SqCL): A unified set of conserved loci for phylogenomics and population genetics of squamate reptiles. Molecular Ecology Resources.

vonHoldt, B. M. et al. (2017). Structural variants in genes associated with human Williams-Beuren syndrome underlie stereotypical hypersociability in domestic dogs. Science Advances.

Delsuc, F. et al. (2016). The phylogenetic affinities of the extinct glyptodonts. Current Biology.

West, A. R. (2016). Mitogenome of the extinct helmeted musk ox, Bootherium bombifrons. Mitochondrial DNA Part B.

Beck, S. et al. (2018). Implications of CpG islands on chromosomal architectures and modes of global gene regulation. Nucleic Acids Research.

Braz, G.T. et al. (2018). Comparative Oligo-FISH Mapping: An Efficient and Powerful Methodology To Reveal Karyotypic and Chromosomal Evolution. Genetics.

Walczak, M. et al. (2018). ATG8 Is Essential Specifically for an Autophagy-Independent Function in Apicoplast Biogenesis in Blood-Stage Malaria Parasites. mBio.

Beagrie, R. A. et al. (2017). Complex multi-enhancer contacts captured by genome architecture mapping. Nature.

Liu, Y. et al. (2017). Construction and Primary Application of Oligos Fluorescence in situ Hybridization Technology in Cotton. Cotton Science.

Nozawa, R.-S. et al. (2017). SAF-A Regulates Interphase Chromosome Structure through Oligomerization with Chromatin-Associated RNAs. Cell.

Phillips, A. F. et al. (2017). Single-Molecule Analysis of mtDNA Replication Uncovers the Basis of the Common Deletion. Molecular Cell.

Qu, M. et al. (2017). Integrated Karyotyping of Woodland Strawberry (Fragaria vesca) with Oligopaint FISH Probes. Cytogenetic and Genome Research

Boettiger, A. N. et al. (2016). Super-resolution imaging reveals distinct chromatin folding for different epigenetic states. Nature.

Giorgetti, L. et al. (2016). Structural organization of the inactive X chromosome in the mouse. Nature.

Li, K. et al. (2016). Divergence between C. melo and African Cucumis Species Identified by Chromosome Painting and rDNA Distribution Pattern. Cytogenetic and Genome Research.

Li, K.-P. et al. (2016). Cytogenetic relationships among Citrullus species in comparison with some genera of the tribe Benincaseae (Cucurbitaceae) as inferred from rDNA distribution patterns. BMC Evolutionary Biology.

Beliveau, B. J. et al. (2015). Single-molecule super-resolution imaging of chromosomes and in situ haplotype visualization using Oligopaint FISH probes. Nature Communications.

Fraser, J. et al. (2015). Hierarchical folding and reorganization of chromosomes are linked to transcriptional changes in cellular differentiation. Molecular Systems Biology.

Han, Y. et al. (2015). Chromosome-Specific Painting in Cucumis Species Using Bulked Oligonucleotides. Genetics.

Murgha, Y. et al. (2015). Combined in vitro transcription and reverse transcription to amplify and label complex synthetic oligonucleotide probe libraries. BioTechniques.

Murgha, Y. E. et al. (2014). Methods for the Preparation of Large Quantities of Complex Single-Stranded Oligonucleotide Libraries. PLOS ONE.

Beliveau, B. J. et al. (2012). Versatile design and synthesis platform for visualizing genomes with Oligopaint FISH probes. Proceedings of the National Academy of Sciences.

Klocke, M.A. et al. (2018). Engineering DNA nanotubes for resilience in an E. coli TXTL system. Synthetic Biology.

Marshall, R. et al. (2018). Rapid and scalable characterization of CRISPR technologies using an E. coli cell-free transcription-translation system. Molecular Cell.

Maxwell, C.S. et al. (2018). A detailed cell-free transcription-translation-based assay to decipher CRISPR protospacer-adjacent motifs. Methods.

Rustad, M. et al. (2018). Cell-free TXTL synthesis of infectious bacteriophage T4 in a single test tube reaction. Synthetic Biology.

Didovyk, A. et al. (2017). Rapid and Scalable Preparation of Bacterial Lysates for Cell-Free Gene Expression. ACS Synthetic Biology.

Majumder, S. et al. (2017). Cell-sized mechanosensitive and biosensing compartment programmed with DNA. Chemical Communications (Cambridge, England).

Marshall, R. et al. (2017). Short DNA containing χ sites enhances DNA stability and gene expression in E. coli cell-free transcription-translation systems. Biotechnology and Bioengineering.

Schenkelberger, M. et al. (2017). Expression regulation by a methyl-CpG binding domain in an E. coli based, cell-free TX-TL system. Physical Biology.

Caschera, F. et al. (2016). Compartmentalization of an all-E. coli Cell-Free Expression System for the Construction of a Minimal Cell. Artificial Life.

Garamella, J. et al. (2016). The All E. coli TX-TL Toolbox 2.0: A Platform for Cell-Free Synthetic Biology. ACS Synthetic Biology.

Takahashi, M. K. et al. (2015). Characterizing and prototyping genetic networks with cell-free transcription-translation reactions. Methods (San Diego, Calif. ).

Takahashi, M. K. et al. (2015). Rapidly characterizing the fast dynamics of RNA genetic circuitry with cell-free transcription-translation (TX-TL) systems. ACS Synthetic Biology.

Caschera, F. et al. (2014). Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system. Biochimie.

Coutable, A. et al. (2014). Preparation of tethered-lipid bilayers on gold surfaces for the incorporation of integral membrane proteins synthesized by cell-free expression. Langmuir: The ACS Journal of Surfaces and Colloids.

Karzbrun, E. et al. (2014). Synthetic biology. Programmable on-chip DNA compartments as artificial cells. Science (New York, N.Y. ).

Sun, Z. Z. et al. (2014). Linear DNA for rapid prototyping of synthetic biological circuits in an Escherichia coli based TX-TL cell-free system. ACS Synthetic Biology.

Maeda, Y. T. et al. (2012). Assembly of MreB filaments on liposome membranes: a synthetic biology approach. ACS Synthetic Biology.

Shin, J. et al. (2012). An E. coli cell-free expression toolbox: application to synthetic gene circuits and artificial cells. ACS Synthetic Biology.

Shin, J. et al. (2012). Genome replication, synthesis, and assembly of the bacteriophage T7 in a single cell-free reaction. ACS Synthetic Biology.

Chalmeau, J. et al. (2011). α-Hemolysin pore formation into a supported phospholipid bilayer using cell-free expression. Biochimica Et Biophysica Acta.

Noireaux, V. et al. (2011). Development of an artificial cell, from self-organization to computation and self-reproduction. Proceedings of the National Academy of Sciences of the United States of America.

Shin, J. et al. (2010). Efficient cell-free expression with the endogenous E. coli RNA polymerase and sigma factor 70. Journal of Biological Engineering.

Shin, J. et al. (2010). Study of messenger RNA inactivation and protein degradation in an Escherichia coli cell-free expression system. Journal of Biological Engineering.

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